Supplemental Figure 2 ...
Number of SNPs retained by UNEAK and PoPoolation2 pipelines at different parameter values on an ApeKI library from 23 worldwide populations of Globodera rostochiensis. ‘MAF’ is the minimum allele frequency; ‘minCov’ is the minimum number of reads/locus/population required to accept a SNP; ‘mnC’ is the minimum proportion of populations in which a locus must have been scored to be accepted. PoPoolation2 does not allow missing data (mnC = 1.0). *The number of SNPs identified by UNEAK was not influenced by the ‘mnC’ value when the minimum allele frequency was set to 5% (MAF = 0.05). ...... Mehr ...
| Verfasser: | |
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| Dokumenttyp: | DataFile |
| Erscheinungsdatum: | 2015 |
| Verlag/Hrsg.: |
Dryad Digital Repository
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| Schlagwörter: | Cyst Nematode / Genotyping by Sequencing / GBS / Pool-Seq / Population Genetics / Belgium / Canada / Cyprus / France / Germany / UK / Netherlands / Norway / United States / Globodera rostochiensis |
| Sprache: | unknown |
| Permalink: | https://search.fid-benelux.de/Record/base-28935865 |
| Datenquelle: | BASE; Originalkatalog |
| Powered By: | BASE |
| Link(s) : | https://dx.doi.org/10.5061/dryad.8mc79/19 |
Number of SNPs retained by UNEAK and PoPoolation2 pipelines at different parameter values on an ApeKI library from 23 worldwide populations of Globodera rostochiensis. ‘MAF’ is the minimum allele frequency; ‘minCov’ is the minimum number of reads/locus/population required to accept a SNP; ‘mnC’ is the minimum proportion of populations in which a locus must have been scored to be accepted. PoPoolation2 does not allow missing data (mnC = 1.0). *The number of SNPs identified by UNEAK was not influenced by the ‘mnC’ value when the minimum allele frequency was set to 5% (MAF = 0.05). ...