Supplemental Figure 2 ...

Number of SNPs retained by UNEAK and PoPoolation2 pipelines at different parameter values on an ApeKI library from 23 worldwide populations of Globodera rostochiensis. ‘MAF’ is the minimum allele frequency; ‘minCov’ is the minimum number of reads/locus/population required to accept a SNP; ‘mnC’ is the minimum proportion of populations in which a locus must have been scored to be accepted. PoPoolation2 does not allow missing data (mnC = 1.0). *The number of SNPs identified by UNEAK was not influenced by the ‘mnC’ value when the minimum allele frequency was set to 5% (MAF = 0.05). ...... Mehr ...

Verfasser: Mimee, Benjamin
Duceppe, Marc-Olivier
Véronneau, Pierre-Yves
Lafond-Lapalme, Joël
Jean, Martine
Belzile, François
Bélair, Guy
Dokumenttyp: DataFile
Erscheinungsdatum: 2015
Verlag/Hrsg.: Dryad Digital Repository
Schlagwörter: Cyst Nematode / Genotyping by Sequencing / GBS / Pool-Seq / Population Genetics / Belgium / Canada / Cyprus / France / Germany / UK / Netherlands / Norway / United States / Globodera rostochiensis
Sprache: unknown
Permalink: https://search.fid-benelux.de/Record/base-28935865
Datenquelle: BASE; Originalkatalog
Powered By: BASE
Link(s) : https://dx.doi.org/10.5061/dryad.8mc79/19

Number of SNPs retained by UNEAK and PoPoolation2 pipelines at different parameter values on an ApeKI library from 23 worldwide populations of Globodera rostochiensis. ‘MAF’ is the minimum allele frequency; ‘minCov’ is the minimum number of reads/locus/population required to accept a SNP; ‘mnC’ is the minimum proportion of populations in which a locus must have been scored to be accepted. PoPoolation2 does not allow missing data (mnC = 1.0). *The number of SNPs identified by UNEAK was not influenced by the ‘mnC’ value when the minimum allele frequency was set to 5% (MAF = 0.05). ...