Additional file 3 of Genomic diversity and signatures of selection in meat and fancy rabbit breeds based on high-density marker data
Additional file 3: Table S7. List of outlier markers identified using PCAdapt. Table S11. Comparative single-breed FST analysis (M1 = Method 1). The genome windows at the extreme lower end of the distributions (99.0th percentile) are presented. Table S12. Comparative single-breed FST analysis (M2 = Method 2). The genome windows at the extreme lower end of the distributions (99.0th percentile) are presented. Table S13. Genome regions identified in the single-breed FST analyses (99.8th percentile). Table S15. List of the markers at the extreme lower end of the distributions (99.95th percentile)... Mehr ...
Additional file 3: Table S7. List of outlier markers identified using PCAdapt. Table S11. Comparative single-breed FST analysis (M1 = Method 1). The genome windows at the extreme lower end of the distributions (99.0th percentile) are presented. Table S12. Comparative single-breed FST analysis (M2 = Method 2). The genome windows at the extreme lower end of the distributions (99.0th percentile) are presented. Table S13. Genome regions identified in the single-breed FST analyses (99.8th percentile). Table S15. List of the markers at the extreme lower end of the distributions (99.95th percentile) identified with the FST single-marker-based analysis for the single-breed approach using Method 1 (M1). SNPs are reported in decreasing order of FST value. Table S16. List of the markers at the extreme lower end of the distributions (99.95th percentile) identified with the FST single-marker-based analysis for the single-breed approach using Method 2 (M2). SNPs are reported in decreasing order of FST value. Table S19. Comparative FST analysis for groups of breeds as defined in Additional file 1: Table S2. The genome windows at the extreme lower end of the distributions (99.0th percentile) are presented. Table S21. List of the markers at the extreme lower end of the distributions (99.95th percentile) identified with the FST single-marker-based analysis using the approach that includes groups of breeds. SNPs are reported in decreasing order of FST value. SNPs are reported in decreasing order of FST value. Table S22. Genotype information for SNPs within the KIT gene region. Table S23. Observed heterozygosity of SNPs within the KIT gene region. Table S24. Genotype information for SNPs within the HMGA2 gene region. Table S25. Observed heterozygosity of SNPs within the HMGA2 gene region.