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Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

Oude Munnink, Bas B., Nieuwenhuijse, David F., Stein, Mart, O'Toole, Aine, Haverkate, Manon, Mollers, Madelief, Kamga, Sandra K., Schapendonk, Claudia, Pronk, Mark, Lexmond, Pascal, van der Linden, Anne, Bestebroer, Theo, Chestakova, Irina, Overmars, Ronald J., van Nieuwkoop, Stefan, Molenkamp, Richard, van der Eijk, Annemiek A., GeurtsvanKessel, Corine, Vennema, Harry, Meijer, Adam, Rambaut, Andrew, van Dissel, Jaap, Sikkema, Reina S., Timen, Aura, Koopmans, Marion, Hoebe, Christian
Veröffentlicht in: Oude Munnink , B B , Nieuwenhuijse , D F , Stein , M , O'Toole , A , Haverkate , M , Mollers , M , Kamga , S K , Schapendonk , C , Pronk , M , Lexmond , P , van der Linden , A , Bestebroer , T , Chestakova , I , Overmars , R J , van Nieuwkoop , S , Molenkamp , R , van der Eijk , A A , GeurtsvanKessel , C , Vennema , H , Meijer , A , Rambaut , A , van Dissel , J , Sikkema , R S , Timen , A , Koopmans , M , Dutch-Covid-19 Response Team & Hoebe , C 2020 , ' Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands ' , Nature Medicine , vol. 26 , no. 9 , pp. 1405-1410 . https://doi.org/10.1038/s41591-020-0997-y;
2020

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COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study

Sikkema, Reina S, Pas, Suzan D, Nieuwenhuijse, David F, O'Toole, Áine, Verweij, Jaco, van der Linden, Anne, Chestakova, Irina, Schapendonk, Claudia, Pronk, Mark, Lexmond, Pascal, Bestebroer, Theo, Overmars, Ronald J, van Nieuwkoop, Stefan, van den Bijllaardt, Wouter, Bentvelsen, Robbert G, van Rijen, Miranda M L, Buiting, Anton G M, van Oudheusden, Anne J G, Diederen, Bram M, Bergmans, Anneke M C, van der Eijk, Annemiek, Molenkamp, Richard, Rambaut, Andrew, Timen, Aura, Kluytmans, Jan A J W, Oude Munnink, Bas B, Kluytmans van den Bergh, Marjolein F Q, Koopmans, Marion P G
Veröffentlicht in: The Lancet Infectious Diseases ; volume 20, issue 11, page 1273-1280 ; ISSN 1473-3099;
2020

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COVID-19 in health-care workers in three hospitals in the south of the Netherlands:a cross-sectional study

Sikkema, Reina S., Pas, Suzan D., Nieuwenhuijse, David F., O'Toole, Áine, Verweij, Jaco J., van der Linden, Anne, Chestakova, Irina, Schapendonk, Claudia, Pronk, Mark, Lexmond, Pascal, Bestebroer, Theo, Overmars, Ronald J., van Nieuwkoop, Stefan, van den Bijllaardt, Wouter, Bentvelsen, Robbert G., van Rijen, Miranda M.L., Buiting, Anton G.M., van Oudheusden, Anne J.G., Diederen, Bram M., Bergmans, Anneke M.C., van der Eijk, Annemiek, Molenkamp, Richard, Rambaut, Andrew, Timen, Aura, Kluytmans, Jan A.J.W., Oude Munnink, Bas B., Kluytmans van den Bergh, Marjolein F.Q., Koopmans, Marion P.G.
Veröffentlicht in: Sikkema , R S , Pas , S D , Nieuwenhuijse , D F , O'Toole , Á , Verweij , J J , van der Linden , A , Chestakova , I , Schapendonk , C , Pronk , M , Lexmond , P , Bestebroer , T , Overmars , R J , van Nieuwkoop , S , van den Bijllaardt , W , Bentvelsen , R G , van Rijen , M M L , Buiting , A G M , van Oudheusden , A J G , Diederen , B M , Bergmans , A M C , van der Eijk , A , Molenkamp , R , Rambaut , A , Timen , A , Kluytmans , J A J W , Oude Munnink , B B , Kluytmans van den Bergh , M F Q & Koopmans , M P G 2020 , ' COVID-19 in health-care workers in three hospitals in the south of the Netherlands : a cross-sectional study ' , The Lancet Infectious Diseases , vol. 20 , no. 11 , pp. 1273-1280 . https://doi.org/10.1016/S1473-3099(20)30527-2;
2020

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Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature.

Holtz, Andrew, Van Weyenbergh, Johan, Hong, Samuel L, Cuypers, Lize, O'Toole, Áine, Dudas, Gytis, Gerdol, Marco, Potter, Barney I, Ntoumi, Francine, Mapanguy, Claujens Chastel Mfoutou, Vanmechelen, Bert, Wawina-Bokalanga, Tony, Van Holm, Bram, Menezes, Soraya Maria, Soubotko, Katja, Van Pottelbergh, Gijs, Wollants, Elke, Vermeersch, Pieter, Jacob, Ann-Sophie, Maes, Brigitte, Obbels, Dagmar, Matheeussen, Veerle, Martens, Geert, Gras, Jérémie, Verhasselt, Bruno, Laffut, Wim, Vael, Carl, Goegebuer, Truus, van der Kant, Rob, Rousseau, Frederic, Schymkowitz, Joost, Serrano, Luis, Delgado, Javier, Wenseleers, Tom, Bours, Vincent, André, Emmanuel, Suchard, Marc A, Rambaut, Andrew, Dellicour, Simon, Maes, Piet, Durkin, Keith, Baele, Guy
2024

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Author Correction: Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

Oude Munnink, Bas B., Nieuwenhuijse, David F., Stein, Mart, O’Toole, Áine, Haverkate, Manon, Mollers, Madelief, Kamga, Sandra K., Schapendonk, Claudia, Pronk, Mark, Lexmond, Pascal, van der Linden, Anne, Bestebroer, Theo, Chestakova, Irina, Overmars, Ronald J., van Nieuwkoop, Stefan, Molenkamp, Richard, van der Eijk, Annemiek A., GeurtsvanKessel, Corine, Vennema, Harry, Meijer, Adam, Rambaut, Andrew, van Dissel, Jaap, Sikkema, Reina S., Timen, Aura, Koopmans, Marion, Oudehuis, G. J. A. P. M., Schinkel, Janke, Kluytmans, Jan, Kluytmans-van den Bergh, Marjolein, van den Bijllaardt, Wouter, Berntvelsen, Robbert G., van Rijen, Miranda M. L., Schneeberger, Peter, Pas, Suzan, Diederen, Bram M., Bergmans, Anneke M. C., van der Eijk, P. A. Verspui, Verweij, Jaco J., Buiting, Anton G. N., Streefkerk, Roel, Aldenkamp, A. P., de Man, P., Koelemal, J. G. M., Ong, D., Paltansing, S., Veassen, N., Sleven, Jacqueline, Bakker, Leendert, Brockhoff, Heinrich, Rietveld, Ariene
Veröffentlicht in: Nature Medicine ; volume 26, issue 11, page 1802-1802 ; ISSN 1078-8956 1546-170X;
2020

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Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch.

O'Toole, Áine, Hill, Verity, Pybus, Oliver G, Watts, Alexander, Bogoch, Issac I, Khan, Kamran, Messina, Jane P, COVID-19 Genomics UK (COG-UK) consortium, Network for Genomic Surveillance in South Africa (NGS-SA), Brazil-UK CADDE Genomic Network, Tegally, Houriiyah, Lessells, Richard R, Giandhari, Jennifer, Pillay, Sureshnee, Tumedi, Kefentse Arnold, Nyepetsi, Gape, Kebabonye, Malebogo, Matsheka, Maitshwarelo, Mine, Madisa, Tokajian, Sima, Hassan, Hamad, Salloum, Tamara, Merhi, Georgi, Koweyes, Jad, Geoghegan, Jemma L, de Ligt, Joep, Ren, Xiaoyun, Storey, Matthew, Freed, Nikki E, Pattabiraman, Chitra, Prasad, Pramada, Desai, Anita S, Vasanthapuram, Ravi, Schulz, Thomas F, Steinbrück, Lars, Stadler, Tanja, Swiss Viollier Sequencing Consortium, Parisi, Antonio, Bianco, Angelica, García de Viedma, Darío, Buenestado-Serrano, Sergio, Borges, Vítor, Isidro, Joana, Duarte, Sílvia, Gomes, João Paulo, Zuckerman, Neta S, Mandelboim, Michal, Mor, Orna, Seemann, Torsten, Arnott, Alicia, Draper, Jenny, Gall, Mailie, Rawlinson, William, Deveson, Ira, Schlebusch, Sanmarié, McMahon, Jamie, Leong, Lex, Lim, Chuan Kok, Chironna, Maria, Loconsole, Daniela, Bal, Antonin, Josset, Laurence, Holmes, Edward, St George, Kirsten, Lasek-Nesselquist, Erica, Sikkema, Reina S, Oude Munnink, Bas, Koopmans, Marion, Brytting, Mia, Sudha Rani, V, Pavani, S, Smura, Teemu, Heim, Albert, Kurkela, Satu, Umair, Massab, Salman, Muhammad, Bartolini, Barbara, Rueca, Martina, Drosten, Christian, Wolff, Thorsten, Silander, Olin, Eggink, Dirk, Reusken, Chantal, Vennema, Harry, Park, Aekyung, Carrington, Christine, Sahadeo, Nikita, Carr, Michael, Gonzalez, Gabo, SEARCH Alliance San Diego, National Virus Reference Laboratory",SeqCOVID-Spain,"Danish Covid-19 Genome Consortium (DCGC), Communicable Diseases Genomic Network (CDGN), Dutch National SARS-CoV-2 surveillance program, Division of Emerging Infectious Diseases (KDCA), de Oliveira, Tulio, Faria, Nuno, Rambaut, Andrew, Kraemer, Moritz UG
2023