Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch.

Late in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using a combination of data from routine surveillance, genomic sequencing and international travel we track the international dispersal of lineages B.1.1.7 and B.1.351 (variant 501Y-V2). We account for potential biases in genomic surveillance efforts by including passenger volumes from location of where the lineage was first reported, London and South Africa respectively. Using the... Mehr ...

Verfasser: O'Toole, Áine
Hill, Verity
Pybus, Oliver G
Watts, Alexander
Bogoch, Issac I
Khan, Kamran
Messina, Jane P
COVID-19 Genomics UK (COG-UK) consortium
Network for Genomic Surveillance in South Africa (NGS-SA)
Brazil-UK CADDE Genomic Network
Tegally, Houriiyah
Lessells, Richard R
Giandhari, Jennifer
Pillay, Sureshnee
Tumedi, Kefentse Arnold
Nyepetsi, Gape
Kebabonye, Malebogo
Matsheka, Maitshwarelo
Mine, Madisa
Tokajian, Sima
Hassan, Hamad
Salloum, Tamara
Merhi, Georgi
Koweyes, Jad
Geoghegan, Jemma L
de Ligt, Joep
Ren, Xiaoyun
Storey, Matthew
Freed, Nikki E
Pattabiraman, Chitra
Prasad, Pramada
Desai, Anita S
Vasanthapuram, Ravi
Schulz, Thomas F
Steinbrück, Lars
Stadler, Tanja
Swiss Viollier Sequencing Consortium
Parisi, Antonio
Bianco, Angelica
García de Viedma, Darío
Buenestado-Serrano, Sergio
Borges, Vítor
Isidro, Joana
Duarte, Sílvia
Gomes, João Paulo
Zuckerman, Neta S
Mandelboim, Michal
Mor, Orna
Seemann, Torsten
Arnott, Alicia
Draper, Jenny
Gall, Mailie
Rawlinson, William
Deveson, Ira
Schlebusch, Sanmarié
McMahon, Jamie
Leong, Lex
Lim, Chuan Kok
Chironna, Maria
Loconsole, Daniela
Bal, Antonin
Josset, Laurence
Holmes, Edward
St George, Kirsten
Lasek-Nesselquist, Erica
Sikkema, Reina S
Oude Munnink, Bas
Koopmans, Marion
Brytting, Mia
Sudha Rani, V
Pavani, S
Smura, Teemu
Heim, Albert
Kurkela, Satu
Umair, Massab
Salman, Muhammad
Bartolini, Barbara
Rueca, Martina
Drosten, Christian
Wolff, Thorsten
Silander, Olin
Eggink, Dirk
Reusken, Chantal
Vennema, Harry
Park, Aekyung
Carrington, Christine
Sahadeo, Nikita
Carr, Michael
Gonzalez, Gabo
SEARCH Alliance San Diego
National Virus Reference Laboratory",SeqCOVID-Spain,"Danish Covid-19 Genome Consortium (DCGC)
Communicable Diseases Genomic Network (CDGN)
Dutch National SARS-CoV-2 surveillance program
Division of Emerging Infectious Diseases (KDCA)
de Oliveira, Tulio
Faria, Nuno
Rambaut, Andrew
Kraemer, Moritz UG
Dokumenttyp: Journal article
Erscheinungsdatum: 2023
Verlag/Hrsg.: Faculty of 1000
Schlagwörter: COVID-19 Genomics UK (COG-UK) consortium / Network for Genomic Surveillance in South Africa (NGS-SA) / Brazil-UK CADDE Genomic Network / Swiss Viollier Sequencing Consortium / SEARCH Alliance San Diego / National Virus Reference Laboratory / SeqCOVID-Spain / Danish Covid-19 Genome Consortium (DCGC) / Communicable Diseases Genomic Network (CDGN) / Dutch National SARS-CoV-2 surveillance program / Division of Emerging Infectious Diseases (KDCA) / B.1.1.7 / B.1.351 / N501Y / SARS-CoV-2 / air travel / coronavirus / genome sequencing / genomic epidemiology / genomic surveillance / genomics / pandemic / sequencing / surveillance / virus / 32 Biomedical and Clinical Sciences / 42 Health Sciences / Vaccine Related / Infectious Diseases / Genetics / Biodefense / Emerging Infectious Diseases / Pneumonia / Lung / Pneumonia & Influenza / Prevention / 3 Good Health and Well Being
Sprache: Englisch
Permalink: https://search.fid-benelux.de/Record/base-29031489
Datenquelle: BASE; Originalkatalog
Powered By: BASE
Link(s) : https://hdl.handle.net/2292/66420

Late in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using a combination of data from routine surveillance, genomic sequencing and international travel we track the international dispersal of lineages B.1.1.7 and B.1.351 (variant 501Y-V2). We account for potential biases in genomic surveillance efforts by including passenger volumes from location of where the lineage was first reported, London and South Africa respectively. Using the software tool grinch (global report investigating novel coronavirus haplotypes), we track the international spread of lineages of concern with automated daily reports, Further, we have built a custom tracking website (cov-lineages.org/global_report.html) which hosts this daily report and will continue to include novel SARS-CoV-2 lineages of concern as they are detected.