Glycerol dibiphytanyl glycerol tetraether lipids (GDGTs) have proven to be important biomarker lipids for specific archaeal lineages and their distribution is used as a paleotemperature proxy. In this study, we analyzed GDGTs in suspended particles in the water column of the Arabian Sea at different positions above, in and below the oxygen minimum zone (OMZ). GDGTs, both as intact polar lipid (IPL) and as core lipids, were detected throughout the water column but were most abundant at the upper part of the OMZ. Core lipid GDGTs, derived from non-living organic matter, were always much more abundant than GDGTs released by acid hydrolysis of an IPL fraction (IPL-derived GDGTs). Comparisons with 16S rRNA gene abundance showed that likely only 1-14% of total archaeal cells present were caught on the 0.7 lm filter used for lipid analysis. Despite this undersampling, the depth profiles of crenarchaeol core lipid with a phosphohexose or dihexose head group match previously reported profiles of (expressed) genes ... : Supplement to: Schouten, Stefan; Pitcher, Angela; Hopmans, Ellen C; Villanueva, Laura; van Bleijswijk, Judith; Sinninghe Damsté, Jaap S (2012): Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids in the Arabian Sea oxygen minimum zone: I. Selective preservation and degradation in the water column and consequences for the TEX86. Geochimica et Cosmochimica Acta, 98, 228-243 ...