Type of errors in the estimated transmission tree.

The left figure represents the transmission tree of a simulated outbreak with 5 cases; there are 2 introductions (clusters) and 3 transmission events. The right figure represents possible estimates of the transmission tree of the simulated outbreak. The vertical ordering of cases in the left and the right figures is identical. The upper right figure shows errors in which an incorrect infector is identified, but the incorrect infector belongs to the same cluster as the true infector (type A errors), the lower right figure represents incorrect identifications of the infector in which the incorre... Mehr ...

Verfasser: Bastiaan R. Van der Roest
Martin C. J. Bootsma
Egil A. J. Fischer
Don Klinkenberg
Mirjam E. E. Kretzschmar
Dokumenttyp: Image
Erscheinungsdatum: 2023
Schlagwörter: Medicine / Biotechnology / Evolutionary Biology / Ecology / Cancer / Infectious Diseases / Computational Biology / Biological Sciences not elsewhere classified / Mathematical Sciences not elsewhere classified / Information Systems not elsewhere classified / determine risk factors / aid infection control / multiple phylogenetic clusters / method correctly identifies / bayesian inference method / infectious disease outbreaks / div >< p / dutch mink farms / introduced multiple times / estimate transmission trees / genome sequencing data / infectious disease / genome sequencing / mink farms / transmission trees / multiple introductions / 63 farms / 13 farms / transmission routes / transmission events / single introduction / priori split / phybreak </ / observed cases / new feature / host dynamics / existing models / epidemiological data / complex class / always true / additional feature / accuracy depending
Sprache: unknown
Permalink: https://search.fid-benelux.de/Record/base-29034403
Datenquelle: BASE; Originalkatalog
Powered By: BASE
Link(s) : https://doi.org/10.1371/journal.pcbi.1010928.s005

The left figure represents the transmission tree of a simulated outbreak with 5 cases; there are 2 introductions (clusters) and 3 transmission events. The right figure represents possible estimates of the transmission tree of the simulated outbreak. The vertical ordering of cases in the left and the right figures is identical. The upper right figure shows errors in which an incorrect infector is identified, but the incorrect infector belongs to the same cluster as the true infector (type A errors), the lower right figure represents incorrect identifications of the infector in which the incorrect infector belongs to a different cluster as the true infector (type B errors). In Type 1 errors neither the true infector nor the incorrect identified infector is an index case. For type 2 errors, the host is an index case in the simulated outbreak but not in the estimated outbreak. For type 3 errors, the host is not an index case in the simulated outbreak but is an index case in the estimated outbreak. (TIF)