Although hydroponic techniques enable intensive and effective crop management, controlling the watering for each crop type and growth stage is challenging using the commonly used timed watering system. Therefore, excessive and insufficient watering occurs frequently. Hydroponic technology that considers the drainage rate can minimize the amount of drainage, thereby reducing environmental pollution and fertilizer consumption. This study compared the drainage rate and the timed watering methods in a strawberry hydroponic system and determined the optimal drainage rate. As the drainage rate increased, the amount of water supplied increased. A significantly negative correlation was found between the amount of water supplied and the total nitrogen content. Drainage electrical conductivity (EC) level was the highest in the 10% drainage rate group. In the 20% drainage rate treatment, leaf length and width increased compared to the four applications timer-supplying method. The yield of fruits weighing more than 27 g was the highest in the 20% drainage rate treatment. Therefore, the 20% drainage rate treatment was the most appropriate. We propose that it is possible to reduce unnecessary fertilizer consumption and increase productivity by controlling the water supply using the drainage rate for precise water supply management of strawberries.