Introduction : Despite their relatively low area coverage, riparian forests are central landscape features providing several ecosystem services. Nevertheless, they are critically endangered in European countries by human pressures (livestock grazing, land use conflicts, canalizations, waste water, .) andalso by natural hazards such as the recent black alder (Alnus glutinosa) extensive decline caused by Phytophthora alni. In this study UAV is used to improve the characterization of riparian areas. Riparian forest species are identified at the individual tree level. The health condition of black alder is assessed. For this purpose a computer based approach has been developped, with low needs of specific operator ability or training. Methods : We used the Gatewing X100 to acquire 16 aerial photographs datasets (7 in classic RGB and 9 in RG NIR) during 5 days (form Augustus to October 2012). We processed a CHM in ArcGIS by combining a national Digital Terrain Model with a photogrammetric DSM generated from a single flight photographs dataset with the "MicMac" opensource platform. The 16 orthophotos were computed with Agisoft Photoscan. Based on the CHM and some basic vegetation index (mean NDVI), a classification/segmentation process was developped in eCognition allowing tree crown extraction. An amount of 113 metrics were computed in eCognition for every tree crown object. The metrics were both derived from the CHM raster and spectral information. Metrics were computed by band (object spectral mean and CHM mean, Harralick entropy, Skewness) but also with band combination (Green NDVI and NDVI). A reference dataset was also acquired through a field survey of 624 individual tree positions accurately localized. The health condition of the black alder was recorded during the field survey. A supervised classification algorithm was developed in R (Random Forest package). Results : Several classification trees were assessed trough global accuracy using the Out Of Bag (OOB) error. The best global accuracy (82%) was obtained ...