Inbreeding depression is associated with recent homozygous-by-descent segments in Belgian Blue beef cattle.

peer reviewed ; [en] BACKGROUND: Cattle populations harbor generally high inbreeding levels that can lead to inbreeding depression (ID). Here, we study ID with different estimators of the inbreeding coefficient F, evaluate their sensitivity to used allele frequencies (founder versus sample allele frequencies), and compare effects from recent and ancient inbreeding. METHODS: We used data from 14,205 Belgian Blue beef cattle genotyped cows that were phenotyped for 11 linear classification traits. We computed estimators of F based on the pedigree information (FPED), on the correlation between uni... Mehr ...

Verfasser: Naji, Maulana
Gualdrón Duarte, José Luis
Forneris, Natalia
Druet, Tom
Dokumenttyp: journal article
Erscheinungsdatum: 2024
Verlag/Hrsg.: Springer Science and Business Media LLC
Schlagwörter: Genetics / Animal Science and Zoology / General Medicine / Ecology / Evolution / Behavior and Systematics / Life sciences / Animal production & animal husbandry / Veterinary medicine & animal health / Genetics & genetic processes / Sciences du vivant / Productions animales & zootechnie / Médecine vétérinaire & santé animale / Génétique & processus génétiques
Sprache: Englisch
Permalink: https://search.fid-benelux.de/Record/base-28889400
Datenquelle: BASE; Originalkatalog
Powered By: BASE
Link(s) : https://orbi.uliege.be/handle/2268/312528

peer reviewed ; [en] BACKGROUND: Cattle populations harbor generally high inbreeding levels that can lead to inbreeding depression (ID). Here, we study ID with different estimators of the inbreeding coefficient F, evaluate their sensitivity to used allele frequencies (founder versus sample allele frequencies), and compare effects from recent and ancient inbreeding. METHODS: We used data from 14,205 Belgian Blue beef cattle genotyped cows that were phenotyped for 11 linear classification traits. We computed estimators of F based on the pedigree information (FPED), on the correlation between uniting gametes (FUNI), on the genomic relationship matrix (FGRM), on excess homozygosity (FHET), or on homozygous-by-descent (HBD) segments (FHBD). RESULTS: FUNI and FGRM were sensitive to used allele frequencies, whereas FHET and FHBD were more robust. We detected significant ID for four traits related to height and length; FHBD and FUNI presenting the strongest associations. Then, we took advantage of the classification of HBD segments in different age-related classes (the length of an HBD segment being inversely related to the number of generations to the common ancestors) to determine that recent HBD classes (common ancestors present approximately up to 15 generations in the past) presented stronger ID than more ancient HBD classes. We performed additional analyses to check whether these observations could result from a lower level of variation in ancient HBD classes, or from a reduced precision to identify these shorter segments. CONCLUSIONS: Overall, our results suggest that mutational load decreases with haplotype age, and that mating plans should consider mainly the levels of recent inbreeding.