Phylogenomic investigation of increasing fluoroquinolone resistance among Belgian cases of Shigellosis between 2013 and 2018 indicates both travel-related imports and domestic circulation

SUPPLEMENTARY MATERIAL : FIGURE S1: Occurrence of gyrA p83, gyrA p87 and parC p80 mutations associated with ciprofloxacin resistance in the background collection. FIGURE S2: Network representation of minimum spanning trees for S. sonnei (A) and S. flexneri (B), TABLE S1: Accession number and metadata for the Belgian samples, TABLE S2: Read trimming statistics, TABLE S3: Assembly and coverage statistics, TABLE S4: Percentage of cgMLST alleles identified, TABLE S5: In silico determined serotypes for all S. flexneri samples, TABLE S6: Detected AMR genes for all samples, TABLE S7: Detected AMR poi... Mehr ...