Rapid Whole Genome Sequencing Diagnoses and Guides Treatment in Critically Ill Children in Belgium in Less than 40 Hours.

peer reviewed ; Rapid Whole Genome Sequencing (rWGS) represents a valuable exploration in critically ill pediatric patients. Early diagnosis allows care to be adjusted. We evaluated the feasibility, turnaround time (TAT), yield, and utility of rWGS in Belgium. Twenty-one unrelated critically ill patients were recruited from the neonatal intensive care units, the pediatric intensive care unit, and the neuropediatric unit, and offered rWGS as a first tier test. Libraries were prepared in the laboratory of human genetics of the University of Liège using Illumina DNA PCR-free protocol. Sequencing... Mehr ...

Verfasser: Lumaka Zola, Aimé
Fasquelle, Corinne
Debray, François-Guillaume
Alkan, Serpil
Jacquinet, Adeline
Harvengt, Julie
Boemer, François
Mulder, André
VAESSEN, Sandrine
Viellevoye, Renaud
Gonon Rodrigues Palmeira, Leonor
CHARLOTEAUX, Benoit
Brysse, Anne
BULK, Saskia
Rigo, Vincent
Bours, Vincent
Dokumenttyp: journal article
Erscheinungsdatum: 2023
Verlag/Hrsg.: MDPI AG
Schlagwörter: Base Space Sequence Hub / Dragen / NICU / NICU-Seq / critically ill newborn / rWGS / rapid whole genome sequencing / Inorganic Chemistry / Organic Chemistry / Physical and Theoretical Chemistry / Computer Science Applications / Spectroscopy / Molecular Biology / General Medicine / Catalysis / Human health sciences / Sciences de la santé humaine
Sprache: Englisch
Permalink: https://search.fid-benelux.de/Record/base-27372651
Datenquelle: BASE; Originalkatalog
Powered By: BASE
Link(s) : https://orbi.uliege.be/handle/2268/301232

peer reviewed ; Rapid Whole Genome Sequencing (rWGS) represents a valuable exploration in critically ill pediatric patients. Early diagnosis allows care to be adjusted. We evaluated the feasibility, turnaround time (TAT), yield, and utility of rWGS in Belgium. Twenty-one unrelated critically ill patients were recruited from the neonatal intensive care units, the pediatric intensive care unit, and the neuropediatric unit, and offered rWGS as a first tier test. Libraries were prepared in the laboratory of human genetics of the University of Liège using Illumina DNA PCR-free protocol. Sequencing was performed on a NovaSeq 6000 in trio for 19 and in duo for two probands. The TAT was calculated from the sample reception to the validation of results. Clinical utility data were provided by treating physicians. A definite diagnosis was reached in twelve (57.5%) patients in 39.80 h on average (range: 37.05-43.7). An unsuspected diagnosis was identified in seven patients. rWGS guided care adjustments in diagnosed patients, including a gene therapy, an off-label drug trial and two condition-specific treatments. We successfully implemented the fastest rWGS platform in Europe and obtained one of the highest rWGS yields. This study establishes the path for a nationwide semi-centered rWGS network in Belgium.