Additional file 2 of Genomic diversity and signatures of selection in meat and fancy rabbit breeds based on high-density marker data

Verfasser:	Mohamad Ballan (11987612) Samuele Bovo (4182802) Giuseppina Schiavo (766650) Michele Schiavitto (11987615) Riccardo Negrini (234230) Luca Fontanesi (9035177)
Dokumenttyp:	Text
Erscheinungsdatum:	2022
Schlagwörter:	Genetics / phenotypic variation among / main phenotypic differences / add novel information / affect coat colour / broad phenotypic diversity / latter comparing breeds / includes many breeds / fancy rabbit breeders / fancy breeds ) / different coat colours / analyzed rabbit breeds / rabbit external traits / coat colours / analyzed breeds / external traits / genomic diversity / different approaches / col2a1 ) / related traits / morphometric traits / ’ argent / wide view / strong candidate / selective sweeps / purpose species / might contribute / liph ) / italian white / italian spotted / italian silver / including single / including genes / included genes / identified based / identification proves / grouped based / giant white / giant grey / genetic loci / fur structure / fixation index / dwarf lop / domestication process / coloured dwarf / checkered giant / burgundy fawn / body sizes / body size / belgian hare
Sprache:	unknown
Permalink:	https://search.fid-benelux.de/Record/base-27300899
Datenquelle:	BASE; Originalkatalog
Powered By:	BASE
Link(s) :	https://doi.org/10.6084/m9.figshare.18864761.v1

Additional file 2: Figure S1. Window-based Neighbor Joining tree. Figure S2. Multidimensional scaling plot. The first three components are provided. Figure S3. Scree plot used to identify the number of principal components that describe well the population structure of the investigated rabbit breeds. The plot displays in decreasing order the percentage of variance explained by each principal component. Figure S4. Manhattan plots of the PCAdapt analysis. Each dot represents a 350-kb genome window. The red line identifies the threshold value (0.1 Bonferroni corrected P-value). Unassembled scaffolds are not reported. Figure S5. Genome regions carrying signatures of selection (99.8th percentile; expanded windows) identified in the studied breeds. Only the assembled autosomes are presented and unassembled scaffolds are not reported. Figure S6. Manhattan plots of the genome-wide FST analyses based on Method 1 (M1). Each dot represents a 350-kb genome window. The blue line identifies the threshold value (99.8th percentile of the distribution). Unassembled scaffolds are not reported. Figure S7. Manhattan plots of the genome-wide FST analyses based on Method 2 (M2). Each dot represents a 350-kb genome window. The blue line identifies the threshold value (99.8th percentile of the distribution). Unassembled scaffolds are not reported.