Implementation of Early Next-Generation Sequencing for Inborn Errors of Immunity:A Prospective Observational Cohort Study of Diagnostic Yield and Clinical Implications in Dutch Genome Diagnostic Centers

Objective: Inborn errors of immunity (IEI) are a heterogeneous group of disorders, affecting different components of the immune system. Over 450 IEI related genes have been identified, with new genes continually being recognized. This makes the early application of next-generation sequencing (NGS) as a diagnostic method in the evaluation of IEI a promising development. We aimed to provide an overview of the diagnostic yield and time to diagnosis in a cohort of patients suspected of IEI and evaluated by an NGS based IEI panel early in the diagnostic trajectory in a multicenter setting in the Ne... Mehr ...

Verfasser: Elsink, Kim
Huibers, Manon M.H.
Hollink, Iris H.I.M.
Simons, Annet
Zonneveld-Huijssoon, Evelien
van der Veken, Lars T.
Leavis, Helen L.
Henriet, Stefanie S.V.
van Deuren, Marcel
van de Veerdonk, Frank L.
Potjewijd, Judith
Berghuis, Dagmar
Dalm, Virgil A.S.H.
Vermont, Clementien L.
van de Ven, Annick A.J.M.
Lambeck, Annechien J.A.
Abbott, Kristin M.
van Hagen, P. Martin
de Bree, Godelieve J.
Kuijpers, Taco W.
Frederix, Geert W.J.
van Gijn, Mariëlle E.
van Montfrans, Joris M.
Dokumenttyp: Artikel
Erscheinungsdatum: 2021
Reihe/Periodikum: Elsink , K , Huibers , M M H , the Genetics First for Primary Immunodeficiency Disorders Consortium , Hollink , I H I M , Simons , A , Zonneveld-Huijssoon , E , van der Veken , L T , Leavis , H L , Henriet , S S V , van Deuren , M , van de Veerdonk , F L , Potjewijd , J , Berghuis , D , Dalm , V A S H , Vermont , C L , van de Ven , A A J M , Lambeck , A J A , Abbott , K M , van Hagen , P M , de Bree , G J , Kuijpers , T W , Frederix , G W J , van Gijn , M E & van Montfrans , J M 2021 , ' Implementation of Early Next-Generation Sequencing for Inborn Errors of Immunity : A Prospective Observational Cohort Study of Diagnostic Yield and Clinical Implications in Dutch Genome Diagnostic Centers ' , Frontiers in Immunology , vol. 12 , 780134 . https://doi.org/10.3389/fimmu.2021.780134 , https://doi.org/10.3389/fimmu.2021.780134
Sprache: Englisch
Permalink: https://search.fid-benelux.de/Record/base-27071817
Datenquelle: BASE; Originalkatalog
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Link(s) : https://pure.eur.nl/en/publications/0fa0e452-8257-4df4-a247-dc7f01e9acf0

Objective: Inborn errors of immunity (IEI) are a heterogeneous group of disorders, affecting different components of the immune system. Over 450 IEI related genes have been identified, with new genes continually being recognized. This makes the early application of next-generation sequencing (NGS) as a diagnostic method in the evaluation of IEI a promising development. We aimed to provide an overview of the diagnostic yield and time to diagnosis in a cohort of patients suspected of IEI and evaluated by an NGS based IEI panel early in the diagnostic trajectory in a multicenter setting in the Netherlands. Study Design: We performed a prospective observational cohort study. We collected data of 165 patients with a clinical suspicion of IEI without prior NGS based panel evaluation that were referred for early NGS using a uniform IEI gene panel. The diagnostic yield was assessed in terms of definitive genetic diagnoses, inconclusive diagnoses and patients without abnormalities in the IEI gene panel. We also assessed time to diagnosis and clinical implications. Results: For children, the median time from first consultation to diagnosis was 119 days versus 124 days for adult patients (U=2323; p=0.644). The median turn-around time (TAT) of genetic testing was 56 days in pediatric patients and 60 days in adult patients (U=1892; p=0.191). A definitive molecular diagnosis was made in 25/65 (24.6%) of pediatric patients and 9/100 (9%) of adults. Most diagnosed disorders were identified in the categories of immune dysregulation (n=10/25; 40%), antibody deficiencies (n=5/25; 20%), and phagocyte diseases (n=5/25; 20%). Inconclusive outcomes were found in 76/165 (46.1%) patients. Within the patient group with a genetic diagnosis, a change in disease management occurred in 76% of patients. Conclusion: In this cohort, the highest yields of NGS based evaluation for IEI early in the diagnostic trajectory were found in pediatric patients, and in the disease categories immune dysregulation and phagocyte diseases. In cases where a ...