Comparing Multiple Locus Variable-Number Tandem Repeat Analyses with Whole-Genome Sequencing as Typing Method for Salmonella Enteritidis Surveillance in The Netherlands, January 2019 to March 2020

ABSTRACT In the Netherlands, whole-genome sequencing (WGS) was implemented as routine typing tool for Salmonella Enteritidis isolates in 2019. Multiple locus variable-number tandem repeat analyses (MLVA) was performed in parallel. The objective was to determine the concordance of MLVA and WGS as typing methods for S. Enteritidis isolates. We included S. Enteritidis isolates from patients that were subtyped using MLVA and WGS-based core-genome Multilocus Sequence Typing (cgMLST) as part of the national laboratory surveillance of Salmonella during January 2019 to March 2020. The concordance of c... Mehr ...

Verfasser: Roan Pijnacker
Maaike van den Beld
Kim van der Zwaluw
Anjo Verbruggen
Claudia Coipan
Alejandra Hernandez Segura
Lapo Mughini-Gras
Eelco Franz
Thijs Bosch
Dokumenttyp: Artikel
Erscheinungsdatum: 2022
Reihe/Periodikum: Microbiology Spectrum, Vol 10, Iss 5 (2022)
Verlag/Hrsg.: American Society for Microbiology
Schlagwörter: Salmonella / clustering / multiple locus variable-number tandem repeat analyses / whole-genome sequencing / Microbiology / QR1-502
Sprache: Englisch
Permalink: https://search.fid-benelux.de/Record/base-26804309
Datenquelle: BASE; Originalkatalog
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Link(s) : https://doi.org/10.1128/spectrum.01375-22