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List of traits routinely collected in a Dutch HF breeding organization.

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GC CNV tagging SNPs genotypes of functional genomics data samples.

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BovineHD genotypes (BTA6:87.68–89.68Mb) used for eQTL mapping.

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Association mapping and fine-mapping of the major clinical mastitis resistance QTL on BTA6.

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Discovery of multiallelic GC CNV using deeply sequenced genomes and familial structure.

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Characterization of the GC CNV tagging SNPs and allelic imbalance pattern.

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Selection signature scan and trait association (clinical mastitis resistance and milk yield) plot.

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eQTL mapping and colocalization of fine-mapping and eQTL mapping results for GC and the non-coding RNA.

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Inspection of functional elements near the GC CNV.

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Summary of the key findings and hypothesis of physiological aspects linking GC expression and CM resistance.