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Roadbook for the implementation of next-generation sequencing in clinical practice in oncology and hemato-oncology in Belgium
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Additional file 1 of COVID-19: first long-term care facility outbreak in the Netherlands following cross-border introduction from Germany, March 2020
Prior distributions of the model parameters.
Tables with additional results.
Extensive treatment of model and MCMC updating steps.
PANGO lineage classifications of the sampled sequences.
Comparison of MCMC and p(MC 3 ) with and without the neighbour-joining tree initialization step.
Type of errors in the estimated transmission tree.
Analysis of simulated outbreaks with fixed model parameters in the MCMC runs, while varying the number of introductions and coalescent rate in the history host.
Analysis of simulated outbreaks with similar parameter values as the SARS-CoV-2 outbreak in mink farms.